Class sugar

Defined in File model.hpp

Inheritance Relationships

Base Type

public cif::mm::residue (Class residue)

Class Documentation

class sugar : public cif::mm::residue 

A sugar is a residue that is part of a glycosylation site.

Public Functions

sugar(branch &branch, const std::string &compoundID, const std::string &asymID, int authSeqID): constructor

inline int num() const

Return the sugar number in the glycosylation tree.

To store the sugar number, the auth_seq_id field has been overloaded in the specification. But since a sugar number should be, ehm, a number and auth_seq_id is specified to contain a string, we do a check here to see if it really is a number.

Returns: The sugar number

std::string name() const: Return the name of this sugar.

inline atom get_link() const: Return the atom the C1 is linked to.

inline void set_link(atom link): Set the link atom C1 is linked to to link.

inline size_t get_link_nr() const: Return the sugar number of the sugar linked to C1.

atom add_atom(row_initializer atom_info): Construct an atom based on the info in atom_info and add it to this sugar.